PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco016643.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24006.7 Da    PI: 9.4595
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco016643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.32.7e-30958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien + rqvtfskRrng+lKKA+ELSvLCdaevavi+fs++gklye+ 
  Aco016643.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIVFSPKGKLYEFG 58
                 79**********************************************95 PP

2K-box67.74e-2379169797
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  k + e++ ++l+ +++ + k++e+L+ ++++llGe+L+s+ ++eL++Le+ +eksl +iR +K ++l eqi +l++kek+lq++n+aLr++
  Aco016643.1  79 KGAVEQNIQQLKFQITIMSKKLESLEASKKKLLGENLDSCCVEELHELESTIEKSLHRIRGRKIKFLEEQIAQLKEKEKMLQKKNEALREQ 169
                  3478999**********************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.286161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-40160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30323IPR002100Transcription factor, MADS-box
CDDcd002655.61E-44376No hitNo description
SuperFamilySSF554552.75E-34388IPR002100Transcription factor, MADS-box
PfamPF003191.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.6E-2383169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.1986178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVAVIVFSP KGKLYEFGSA  60
SMQKTIDRYR TYSKNDCDKG AVEQNIQQLK FQITIMSKKL ESLEASKKKL LGENLDSCCV  120
EELHELESTI EKSLHRIRGR KIKFLEEQIA QLKEKEKMLQ KKNEALREQN QVPLATLRDV  180
APHRDAANHP MDVETELCIG WPRTREEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A1e-18372271Myocyte-specific enhancer factor 2A
3mu6_B1e-18372271Myocyte-specific enhancer factor 2A
3mu6_C1e-18372271Myocyte-specific enhancer factor 2A
3mu6_D1e-18372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919081.12e-86PREDICTED: MADS-box transcription factor 50-like isoform X2
SwissprotQ9XJ607e-87MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0D9Z1D42e-85A0A0D9Z1D4_9ORYZ; Uncharacterized protein
STRINGGRMZM2G171365_P018e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-54AGAMOUS-like 20